Sourdough Pumpkin Muffins

I make a batch of these sourdough pumpkin muffins every fall (and honestly, whenever I have discard and a can of pumpkin on the same shelf). They’re moist, lightly spiced, and use that tangy sourdough discard to boost flavor and reduce waste. These are perfect for breakfast, a school lunchbox treat, or warming up a chilly weekend brunch.

What makes this recipe special

This recipe turns two pantry staples—sourdough discard and canned pumpkin—into a reliably tender muffin with a little chocolate for fun. The discard adds mild tang and improves texture without needing to feed your starter, so it’s a great “use-up” recipe that doesn’t sacrifice flavor.

“Moist, tender, and just tangy enough—these muffins vanish fast at our house.” — weekend brunch regular

Reasons to try it:

  • Waste-smarter: uses 1 cup sourdough discard so you don’t throw away starter.
  • Fast and forgiving: easy mixing method that’s kind to novice bakers.
  • Crowd-pleasing: chocolate chips make it kid-approved while the pumpkin and spices feel seasonal.
  • Versatile: perfect for weekday breakfasts, potlucks, or a holiday morning.

The cooking process explained

Before you start, here’s the quick flow so you know what to expect: whisk wet ingredients including discard, combine dry ingredients separately, fold the dry into the wet until just mixed, fold in chocolate chips, portion into a lined tin, and bake 18–22 minutes. It’s a single-bowl wet mix plus a dry bowl—minimal equipment, minimal fuss.

Yield: about 12 standard muffins

Key Ingredients

  • 1 cup sourdough discard (unfed or recently fed; room temperature)
  • 1 cup pumpkin puree (canned or homemade)
  • 1/2 cup granulated sugar
  • 1/2 cup brown sugar
  • 1/2 cup vegetable oil (can substitute melted coconut oil or light olive oil)
  • 2 large eggs
  • 1 teaspoon vanilla extract
  • 2 cups all-purpose flour (for gluten-free, try a 1:1 GF blend but expect slight texture change)
  • 1 teaspoon baking soda
  • 1 teaspoon baking powder
  • 1 teaspoon ground cinnamon
  • 1/2 teaspoon ground nutmeg (or pumpkin pie spice for convenience)
  • 1/2 teaspoon salt
  • 1 cup chocolate chips (dark or semisweet; swap for raisins or chopped nuts if preferred)

Ingredient notes:

  • Sourdough discard: a discard that’s too acidic (very sour) can slightly affect rise; if your discard is extremely tangy, use 3/4 cup and add 1/4 cup plain yogurt or milk instead.
  • Oils vs. butter: oil keeps muffins moist longer; melted butter adds richer flavor but may firm the crumb slightly.

Step-by-step instructions

  1. Preheat the oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners or grease generously.
  2. In a large mixing bowl, whisk together the sourdough discard, pumpkin puree, granulated sugar, brown sugar, vegetable oil, eggs, and vanilla until smooth and homogeneous.
  3. In a separate bowl, combine the all-purpose flour, baking soda, baking powder, cinnamon, nutmeg, and salt. Whisk to distribute the leavening and spices evenly.
  4. Add the dry mixture to the wet mixture in two additions, folding gently with a spatula until just combined. Stop when you no longer see streaks of flour — small lumps are fine.
  5. Fold in the chocolate chips, reserving a few to sprinkle on top if you like a decorative finish.
  6. Spoon the batter into the prepared muffin tin, filling each cup about two-thirds full.
  7. Bake for 18–22 minutes, rotating once halfway through if your oven heats unevenly. Muffins are done when the tops spring back slightly and a toothpick inserted into the center comes out clean or with only a few moist crumbs.
  8. Let muffins cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.

Sourdough Pumpkin Muffins

Best ways to enjoy it

  • Breakfast: split and warm, spread a little butter or cream cheese, and serve with coffee.
  • Brunch spread: place on a board with fresh fruit, yogurt, and a pot of strong tea.
  • Snack: pack one in a lunchbox with apple slices for an afternoon energy boost.
  • Dessert: warm slightly and top with a scoop of vanilla ice cream for a quick indulgence.

Storage and reheating tips

  • Room temperature: store in an airtight container for up to 2 days.
  • Refrigerator: keeps well for 4–5 days if you prefer chilled storage (bring to room temp or warm before serving).
  • Freezer: wrap individually in plastic wrap and place in a freezer bag for up to 3 months. Thaw at room temperature or microwave for 20–30 seconds from frozen.
  • Reheating: microwave for 10–20 seconds for a warm muffin, or reheat in a 325°F (160°C) oven for 5–7 minutes for a lightly crisp exterior.
    Food safety: discard any muffins left at room temperature more than 2 days. If refrigerated, reheat thoroughly before eating if stored longer.

Pro chef tips

  • Don’t overmix: overworking the batter develops gluten and makes muffins dense — fold until just combined.
  • Check your leaveners: if your baking powder is older than 6 months, replace it for best rise. Baking soda needs acid (from the discard and pumpkin) to react; make sure your discard is not completely neutralized.
  • Use room-temperature eggs: they emulsify better and give a more uniform batter.
  • Even baking: fill tins evenly and tap the tray lightly on the counter to remove large air pockets.
  • Texture tweak: for an extra tender crumb, swap 1/4 cup of the flour for cake flour.

Creative twists

  • Oat crumble top: sprinkle a mixture of oats, brown sugar, butter (or coconut oil), and a pinch of cinnamon on top before baking for crunch.
  • Nutty add-ins: fold in 1/2 cup chopped walnuts or pecans for texture.
  • Spice swap: increase cinnamon to 1 1/2 teaspoons and add 1/4 teaspoon cloves for a deeper spice profile.
  • Dairy option: replace oil with 1/2 cup melted butter for richer flavor.
  • Vegan adaptation: use flax eggs (2 tbsp ground flax + 6 tbsp water) and swap chocolate chips for dairy-free chips; use a vegan yogurt instead of eggs if needed.

Your questions answered

Q: Can I use fed (active) starter instead of discard?
A: Yes—fed starter will work, but it’s stronger and less acidic. You may notice slightly less tang and a small difference in rise; the recipe still performs well.

Q: What if I don’t have pumpkin puree?
A: Mashed cooked sweet potato or butternut squash puree are great 1:1 substitutes. They alter flavor subtly but keep moisture and texture similar.

Q: My muffins came out dense — why?
A: Likely overmixing or expired leavening. Also check the discard: if it’s very acidic, it can inhibit rise. Make sure to fold gently and use fresh baking powder/soda.

Q: Can I halve or double this recipe?
A: Yes. Halving works fine in a smaller bowl; doubling is straightforward—mix in a larger bowl and bake in two tins, rotating as needed.

Q: Is it safe to eat batter because of raw eggs and starter?
A: No. As with any batter containing raw eggs, do not taste uncooked batter. Baking brings the muffins to safe eating temperature.

Conclusion

If you want another take on sourdough-pumpkin baking, check this variation with oat crumble from Sourdough Pumpkin Muffins With Oat Crumble – Farmhouse on Boone for a crunchy top. For a classic, highly-rated approach that inspired many discard bakers, see the original post at Sourdough Pumpkin Muffins Recipe | Mel’s Kitchen Cafe.

Sourdough Pumpkin Muffins

These sourdough pumpkin muffins are moist, lightly spiced, and made using sourdough discard and pumpkin puree for a deliciously tender treat.
Prep Time 10 minutes
Cook Time 20 minutes
Total Time 30 minutes
Course Breakfast, Dessert, Snack
Cuisine American
Servings 12 muffins
Calories 180 kcal

Ingredients
  

Wet Ingredients

  • 1 cup sourdough discard Can use unfed or recently fed, at room temperature.
  • 1 cup pumpkin puree Canned or homemade.
  • 1/2 cup granulated sugar
  • 1/2 cup brown sugar
  • 1/2 cup vegetable oil Can substitute melted coconut oil or light olive oil.
  • 2 large eggs Use room temperature for better emulsion.
  • 1 teaspoon vanilla extract

Dry Ingredients

  • 2 cups all-purpose flour For gluten-free, try a 1:1 GF blend but expect slight texture change.
  • 1 teaspoon baking soda
  • 1 teaspoon baking powder Check freshness for best results.
  • 1 teaspoon ground cinnamon
  • 1/2 teaspoon ground nutmeg Or pumpkin pie spice for convenience.
  • 1/2 teaspoon salt

Mix-ins

  • 1 cup chocolate chips Dark or semisweet; can substitute with raisins or chopped nuts.

Instructions
 

Preparation

  • Preheat the oven to 350°F (175°C) and line a 12-cup muffin tin with paper liners or grease generously.
  • In a large mixing bowl, whisk together the sourdough discard, pumpkin puree, granulated sugar, brown sugar, vegetable oil, eggs, and vanilla until smooth.
  • In a separate bowl, combine the all-purpose flour, baking soda, baking powder, cinnamon, nutmeg, and salt. Whisk to distribute evenly.
  • Add the dry mixture to the wet mixture in two additions, folding gently until just combined, being careful not to overmix.
  • Fold in the chocolate chips, reserving a few for sprinkling on top.
  • Spoon the batter into the prepared muffin tin, filling each cup about two-thirds full.
  • Bake for 18–22 minutes, rotating once halfway through. Muffins are done when the tops spring back and a toothpick comes out clean.
  • Let muffins cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.

Notes

Store muffins in an airtight container at room temperature for up to 2 days or in the refrigerator for 4–5 days. Freeze individually wrapped in plastic wrap for up to 3 months.
Keyword Chocolate Muffins, fall baking, muffins, pumpkin muffins, Sourdough Muffins

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